Publications

Google Scholar
Author order generally follows the convention in biology, where first author carried out majority of the work (joint first authorship is indicated by ‘∗’)

Journal papers

1. Sashittal P., Zhang H., Iacobuzio-Donahue C. and Raphael B.
   ConDoR: Tumor phylogeny inference with a copy-number constrained mutation loss model
   Genome Biology, 2023 (In print).

2. Sashittal P.*, Schmidt H.*, Chan M. and Raphael B.
   Startle: a star homoplasy approach for CRISPR-Cas9 lineage tracing
   Cell Systems, 2023 (In print).

3. Schmidt H., Sashittal P. and Raphael B.
   A zero-agnostic model for copy number evolution in cancer
   PLOS Computational Biology, 2023 (In print).

4. Sashittal P., Chiodi R., Morgan T. B., Desjardins O., Heindel T. J. and Bodony D.
   Modal analysis and interface tracking of multiphase flows using dynamic mode decomposition
   International Journal of Multiphase Flows, 2022.

5. Zhang C.*, Sashittal P.*, Xiang M., Zhang Y., Kazi A. and El-Kebir M.
   Accurate identification of transcription regulatory sequences and genes in Coronaviruses
   Molecular Biology and Evolution, 2022.

6. Sashittal P., Zaccaria S. and El-Kebir M.
   Parsimonious clone tree integration in cancer
   Algorithms and Molecular Biology, 2022.

7. Oh C.*, Sashittal P.*, Zhou A., Wang L., El-Kebir M. and Nguyen T. H.
   Design of SARS-CoV-2 variant-specific PCR assays considering regional and temporal characteristics
   Applied and Environmental Microbiology, 2022.

8. Sashittal P., Zhang, C., Peng J. and El-Kebir M.
   Jumper enables discontinuous transcript assembly in Coronaviruses
   Nature Communications, 2021.

9. Sashittal P. and Bodony D.
   Data driven sensor placement for fluid flows
   Theoretical and Computational Fluid Dynamics, 2021.

10. Weber, L.*, Sashittal P.*, and El-Kebir M.
    doubletD: detecting doublets in single-cell DNA sequencing data
    Bioinformatics, 2021.

11. Sashittal P. and El-Kebir M.
    Sampling and summarizing transmission trees with multi-strain infections
    Bioinformatics, 2020. [Paper]

12. Sashittal P. and Bodony D.
    Reduced-order control using low-rank dynamic mode decomposition
    Theoretical and Computational Fluid Dynamics, 2019. [Paper]